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A collection of tutorials about the coarse-grained simulator oxDNA and associated tools.

Tools for oxDNA:

 * oxDNA: https://dna.physics.ox.ac.uk
 * oxView: https://github.com/sulcgroup/oxdna-viewer/
 * tacoxDNA: http://tacoxdna.sissa.it/cadnano_oxDNA

Design tools:
 * caDNAno: https://cadnano.org/
 * vHelix: http://vhelix.net/
 * DAEDALUS and TALOS: http://bathebionano.org/software/
 * Adenita: https://github.com/edellano/Adenita-SAMSON-Edition
 * Tiamat: http://yanlab.asu.edu/Resources.html
 * MagicDNA: https://github.com/cmhuang2011/magicDNA

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Videos
oxDNA tutorials
oxDNA tutorial without installation
00:07:19
oxDNA tutorial without installation

1,730 views

1 year ago

oxDNA tutorials
Setup a DNA-protein hybrid simulation using oxView
00:13:42
Setup a DNA-protein hybrid simulation using oxView

2,063 views

4 years ago

oxDNA tutorials
Importing caDNAno files into oxView
00:07:37
Importing caDNAno files into oxView

1,354 views

4 years ago

oxDNA tutorials
FNANO21 - Poster 7.04: Creating a DNA tetrahedron in oxView
00:04:48
FNANO21 - Poster 7.04: Creating a DNA tetrahedron in oxView

2,127 views

4 years ago

oxDNA tutorials
Creating DNA designs in oxView for oxDNA
00:10:06
Creating DNA designs in oxView for oxDNA

3,026 views

5 years ago

oxDNA tutorials
Introduction to running live relaxation simulations using ox-serve.
00:06:27
Introduction to running live relaxation simulations using ox-serve.

2,183 views

5 years ago

oxDNA tutorials
Render photo-realistic images of oxDNA structures using Blender
00:10:08
Render photo-realistic images of oxDNA structures using Blender

1,111 views

5 years ago

oxDNA tutorials
Creating DNA designs in vHelix for oxDNA 2: a DNA rotaxane
00:23:27
Creating DNA designs in vHelix for oxDNA 2: a DNA rotaxane

1,103 views

5 years ago

oxDNA tutorials
Creating DNA designs in vHelix for simulation in oxDNA 1
00:31:14
Creating DNA designs in vHelix for simulation in oxDNA 1

1,997 views

5 years ago

oxDNA tutorials
Creating oxDNA videos in oxView
00:07:48
Creating oxDNA videos in oxView

1,901 views

5 years ago

oxDNA tutorials
Getting started with oxDNA in Windows
00:13:04
Getting started with oxDNA in Windows

3,336 views

5 years ago

oxDNA tutorials
Arranging a tetrahedron from caDNAno in oxView
00:07:51
Arranging a tetrahedron from caDNAno in oxView

2,689 views

5 years ago

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